5 #ifndef VIENNA_RNA_PACKAGE_PARAMS_DEFAULT_H
6 #define VIENNA_RNA_PACKAGE_PARAMS_DEFAULT_H
19 extern int hairpin37[31];
20 extern int hairpindH[31];
21 extern int bulge37[31];
22 extern int bulgedH[31];
23 extern int internal_loop37[31];
24 extern int internal_loopdH[31];
25 extern int mismatchI37[
NBPAIRS+1][5][5];
26 extern int mismatchIdH[
NBPAIRS+1][5][5];
27 extern int mismatch1nI37[
NBPAIRS+1][5][5];
28 extern int mismatch23I37[
NBPAIRS+1][5][5];
29 extern int mismatch1nIdH[
NBPAIRS+1][5][5];
30 extern int mismatch23IdH[
NBPAIRS+1][5][5];
31 extern int mismatchH37[
NBPAIRS+1][5][5];
32 extern int mismatchM37[
NBPAIRS+1][5][5];
33 extern int mismatchHdH[
NBPAIRS+1][5][5];
34 extern int mismatchMdH[
NBPAIRS+1][5][5];
35 extern int mismatchExt37[
NBPAIRS+1][5][5];
36 extern int mismatchExtdH[
NBPAIRS+1][5][5];
38 extern int dangle5_37[
NBPAIRS+1][5];
39 extern int dangle3_37[
NBPAIRS+1][5];
40 extern int dangle3_dH[
NBPAIRS+1][5];
41 extern int dangle5_dH[
NBPAIRS+1][5];
56 extern int ML_closing37;
57 extern int ML_closingdH;
58 extern int ML_intern37;
59 extern int ML_interndH;
63 extern int MultipleCA37;
64 extern int MultipleCAdH;
65 extern int MultipleCB37;
66 extern int MultipleCBdH;
74 extern int TerminalAU37;
75 extern int TerminalAUdH;
77 extern int DuplexInit37;
78 extern int DuplexInitdH;
80 extern char Tetraloops[281];
81 extern int Tetraloop37[40];
82 extern int TetraloopdH[40];
83 extern char Triloops[241];
84 extern int Triloop37[40];
85 extern int TriloopdH[40];
86 extern char Hexaloops[361];
87 extern int Hexaloop37[40];
88 extern int HexaloopdH[40];
90 extern int GQuadAlpha37;
91 extern int GQuadAlphadH;
92 extern int GQuadBeta37;
93 extern int GQuadBetadH;
94 extern int GQuadLayerMismatch37;
95 extern int GQuadLayerMismatchH;
96 extern int GQuadLayerMismatchMax;
98 extern double Tmeasure;
Energy parameter constants.
#define NBPAIRS
Definition: constants.h:25